Transcriptome profiling revealed diverse gene expression patterns in poplar (Populus × euramericana) under different planting densities.
Identifieur interne : 000656 ( Main/Exploration ); précédent : 000655; suivant : 000657Transcriptome profiling revealed diverse gene expression patterns in poplar (Populus × euramericana) under different planting densities.
Auteurs : Kun Ning [République populaire de Chine] ; Changjun Ding [République populaire de Chine] ; Qinjun Huang [République populaire de Chine] ; Weixi Zhang [République populaire de Chine] ; Chengchao Yang [République populaire de Chine] ; Dejun Liang [République populaire de Chine] ; Ruting Fan [République populaire de Chine] ; Xiaohua Su [République populaire de Chine]Source :
- PloS one [ 1932-6203 ] ; 2019.
Descripteurs français
- KwdFr :
- MESH :
- croissance et développement : Populus.
- génétique : Populus, Protéines végétales.
- Analyse de profil d'expression de gènes, Densité de population, Régulation de l'expression des gènes végétaux, Transcriptome.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Plant Proteins.
- genetics : Populus.
- growth & development : Populus.
- Gene Expression Profiling, Gene Expression Regulation, Plant, Population Density, Transcriptome.
Abstract
Certain plant genotypes can achieve optimal growth under appropriate environmental conditions. Under high planting density conditions, plants undergo competition for uptake and utilization of light and nutrients. However, the relationship between whole-genome expression patterns and the planting density in perennial woody plants remains unknown. In this study, whole-genome RNA sequencing of poplar (Populus × euramericana) was carried out at three different sampling heights to determine gene expression patterns under high (HD) and low (LD) planting densities. As a result, 4,004 differentially expressed genes (DEGs) were detected between HD and LD, of which 2,300, 701, and 1,003 were detected at the three positions, upper, middle and bottom, respectively. Function annotation results further revealed that a large number of the DEGs were involved in distinct biological functions. There were significant changes in the expression of metabolism-related and stimulus-related genes in response to planting density. There were 37 DEGs that were found at all three positions and were subsequently screened. Several DEGs related to plant light responses and photosynthesis were observed at different positions. Meanwhile, numbers of genes related to auxin/indole-3-acetic acid, and carbon and nitrogen metabolism were also revealed, displaying overall trends of upregulation under HD. These findings provide a basis for identifying candidate genes related to planting density and could increase our molecular understanding of the effect of planting density on gene expression.
DOI: 10.1371/journal.pone.0217066
PubMed: 31141527
PubMed Central: PMC6541269
Affiliations:
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Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Ding, Changjun" sort="Ding, Changjun" uniqKey="Ding C" first="Changjun" last="Ding">Changjun Ding</name><affiliation wicri:level="3"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Huang, Qinjun" sort="Huang, Qinjun" uniqKey="Huang Q" first="Qinjun" last="Huang">Qinjun Huang</name><affiliation wicri:level="3"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Zhang, Weixi" sort="Zhang, Weixi" uniqKey="Zhang W" first="Weixi" last="Zhang">Weixi Zhang</name><affiliation wicri:level="3"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Yang, Chengchao" sort="Yang, Chengchao" uniqKey="Yang C" first="Chengchao" last="Yang">Chengchao Yang</name><affiliation wicri:level="1"><nlm:affiliation>Liaoning Provincial Institute of Poplar, Gaizhou, Liaoning Province, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Liaoning Provincial Institute of Poplar, Gaizhou, Liaoning Province</wicri:regionArea><wicri:noRegion>Liaoning Province</wicri:noRegion></affiliation></author><author><name sortKey="Liang, Dejun" sort="Liang, Dejun" uniqKey="Liang D" first="Dejun" last="Liang">Dejun Liang</name><affiliation wicri:level="1"><nlm:affiliation>Liaoning Provincial Institute of Poplar, Gaizhou, Liaoning Province, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Liaoning Provincial Institute of Poplar, Gaizhou, Liaoning Province</wicri:regionArea><wicri:noRegion>Liaoning Province</wicri:noRegion></affiliation></author><author><name sortKey="Fan, Ruting" sort="Fan, Ruting" uniqKey="Fan R" first="Ruting" last="Fan">Ruting Fan</name><affiliation wicri:level="3"><nlm:affiliation>Annoroad Gene Technology Co., Ltd, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Annoroad Gene Technology Co., Ltd, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Su, Xiaohua" sort="Su, Xiaohua" uniqKey="Su X" first="Xiaohua" last="Su">Xiaohua Su</name><affiliation wicri:level="3"><nlm:affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation><affiliation wicri:level="1"><nlm:affiliation>Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu Province, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu Province</wicri:regionArea><wicri:noRegion>Jiangsu Province</wicri:noRegion></affiliation></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Gene Expression Profiling (MeSH)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Plant Proteins (genetics)</term><term>Population Density (MeSH)</term><term>Populus (genetics)</term><term>Populus (growth & development)</term><term>Transcriptome (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Densité de population (MeSH)</term><term>Populus (croissance et développement)</term><term>Populus (génétique)</term><term>Protéines végétales (génétique)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Transcriptome (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Populus</term><term>Protéines végétales</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Plant</term><term>Population Density</term><term>Transcriptome</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Densité de population</term><term>Régulation de l'expression des gènes végétaux</term><term>Transcriptome</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Certain plant genotypes can achieve optimal growth under appropriate environmental conditions. Under high planting density conditions, plants undergo competition for uptake and utilization of light and nutrients. However, the relationship between whole-genome expression patterns and the planting density in perennial woody plants remains unknown. In this study, whole-genome RNA sequencing of poplar (Populus × euramericana) was carried out at three different sampling heights to determine gene expression patterns under high (HD) and low (LD) planting densities. As a result, 4,004 differentially expressed genes (DEGs) were detected between HD and LD, of which 2,300, 701, and 1,003 were detected at the three positions, upper, middle and bottom, respectively. Function annotation results further revealed that a large number of the DEGs were involved in distinct biological functions. There were significant changes in the expression of metabolism-related and stimulus-related genes in response to planting density. There were 37 DEGs that were found at all three positions and were subsequently screened. Several DEGs related to plant light responses and photosynthesis were observed at different positions. Meanwhile, numbers of genes related to auxin/indole-3-acetic acid, and carbon and nitrogen metabolism were also revealed, displaying overall trends of upregulation under HD. These findings provide a basis for identifying candidate genes related to planting density and could increase our molecular understanding of the effect of planting density on gene expression.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31141527</PMID><DateCompleted><Year>2020</Year><Month>01</Month><Day>29</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>09</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>14</Volume><Issue>5</Issue><PubDate><Year>2019</Year></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS One</ISOAbbreviation></Journal><ArticleTitle>Transcriptome profiling revealed diverse gene expression patterns in poplar (Populus × euramericana) under different planting densities.</ArticleTitle><Pagination><MedlinePgn>e0217066</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0217066</ELocationID><Abstract><AbstractText>Certain plant genotypes can achieve optimal growth under appropriate environmental conditions. Under high planting density conditions, plants undergo competition for uptake and utilization of light and nutrients. However, the relationship between whole-genome expression patterns and the planting density in perennial woody plants remains unknown. In this study, whole-genome RNA sequencing of poplar (Populus × euramericana) was carried out at three different sampling heights to determine gene expression patterns under high (HD) and low (LD) planting densities. As a result, 4,004 differentially expressed genes (DEGs) were detected between HD and LD, of which 2,300, 701, and 1,003 were detected at the three positions, upper, middle and bottom, respectively. Function annotation results further revealed that a large number of the DEGs were involved in distinct biological functions. There were significant changes in the expression of metabolism-related and stimulus-related genes in response to planting density. There were 37 DEGs that were found at all three positions and were subsequently screened. Several DEGs related to plant light responses and photosynthesis were observed at different positions. Meanwhile, numbers of genes related to auxin/indole-3-acetic acid, and carbon and nitrogen metabolism were also revealed, displaying overall trends of upregulation under HD. These findings provide a basis for identifying candidate genes related to planting density and could increase our molecular understanding of the effect of planting density on gene expression.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Ning</LastName><ForeName>Kun</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ding</LastName><ForeName>Changjun</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Huang</LastName><ForeName>Qinjun</ForeName><Initials>Q</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Weixi</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Chengchao</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Liaoning Provincial Institute of Poplar, Gaizhou, Liaoning Province, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liang</LastName><ForeName>Dejun</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Liaoning Provincial Institute of Poplar, Gaizhou, Liaoning Province, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fan</LastName><ForeName>Ruting</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Annoroad Gene Technology Co., Ltd, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Su</LastName><ForeName>Xiaohua</ForeName><Initials>X</Initials><Identifier Source="ORCID">0000-0001-8427-4727</Identifier><AffiliationInfo><Affiliation>State Key Laboratory of Tree Genetics and Breeding, Research Institute of Forestry, Chinese Academy of Forestry; Key Laboratory of Tree Breeding and Cultivation, State Forestry and Grassland Administration, Beijing, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu Province, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>05</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="Y">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011156" MajorTopicYN="N">Population Density</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="Y">Transcriptome</DescriptorName></MeshHeading></MeshHeadingList><CoiStatement>The authors have declared that no competing interests exist.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>11</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>05</Month><Day>04</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>5</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>5</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>1</Month><Day>30</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31141527</ArticleId><ArticleId IdType="doi">10.1371/journal.pone.0217066</ArticleId><ArticleId IdType="pii">PONE-D-18-32040</ArticleId><ArticleId IdType="pmc">PMC6541269</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Curr Opin Struct Biol. 2016 Aug;39:46-53</Citation><ArticleIdList><ArticleId IdType="pubmed">27131043</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2011 May 5;473(7345):55-60</Citation><ArticleIdList><ArticleId IdType="pubmed">21499260</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2008;179(1):15-32</Citation><ArticleIdList><ArticleId IdType="pubmed">18422906</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2001 Jan;25(2):213-21</Citation><ArticleIdList><ArticleId IdType="pubmed">11169197</ArticleId></ArticleIdList></Reference><Reference><Citation>Front Plant Sci. 2016 Jun 28;7:944</Citation><ArticleIdList><ArticleId IdType="pubmed">27446171</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2013 Mar;25(3):834-50</Citation><ArticleIdList><ArticleId IdType="pubmed">23524661</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Protoc. 2008;3(6):1101-8</Citation><ArticleIdList><ArticleId IdType="pubmed">18546601</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2004 Feb;37(4):471-83</Citation><ArticleIdList><ArticleId IdType="pubmed">14756757</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Plant Sci. 2005 Mar;10(3):138-43</Citation><ArticleIdList><ArticleId IdType="pubmed">15749472</ArticleId></ArticleIdList></Reference><Reference><Citation>Front Plant Sci. 2017 Apr 11;8:480</Citation><ArticleIdList><ArticleId IdType="pubmed">28443104</ArticleId></ArticleIdList></Reference><Reference><Citation>Front Plant Sci. 2017 May 09;8:532</Citation><ArticleIdList><ArticleId IdType="pubmed">28536581</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2011 Apr 1;332(6025):103-6</Citation><ArticleIdList><ArticleId IdType="pubmed">21454788</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell Rep. 2010 Sep;29(9):977-86</Citation><ArticleIdList><ArticleId IdType="pubmed">20559833</ArticleId></ArticleIdList></Reference><Reference><Citation>J Plant Physiol. 2011 May 15;168(8):816-23</Citation><ArticleIdList><ArticleId IdType="pubmed">21316797</ArticleId></ArticleIdList></Reference><Reference><Citation>Front Plant Sci. 2017 Nov 28;8:2001</Citation><ArticleIdList><ArticleId IdType="pubmed">29234331</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell Environ. 2005 Apr;28(4):500-12</Citation><ArticleIdList><ArticleId IdType="pubmed">16229082</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Genet Genomics. 2009 Nov;282(5):503-16</Citation><ArticleIdList><ArticleId IdType="pubmed">19760256</ArticleId></ArticleIdList></Reference><Reference><Citation>J Biol Chem. 2010 Jan 29;285(5):3478-86</Citation><ArticleIdList><ArticleId IdType="pubmed">19923216</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Biotechnol. 2010 May;28(5):511-5</Citation><ArticleIdList><ArticleId IdType="pubmed">20436464</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2003 Feb;15(2):533-43</Citation><ArticleIdList><ArticleId IdType="pubmed">12566590</ArticleId></ArticleIdList></Reference><Reference><Citation>J Biol Chem. 2003 Jun 27;278(26):23936-43</Citation><ArticleIdList><ArticleId IdType="pubmed">12695517</ArticleId></ArticleIdList></Reference><Reference><Citation>J Exp Bot. 2000 Feb;51(343):227-37</Citation><ArticleIdList><ArticleId IdType="pubmed">10938829</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2012;7(2):e30619</Citation><ArticleIdList><ArticleId IdType="pubmed">22312429</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Bot. 2005 Sep;92(9):1425-31</Citation><ArticleIdList><ArticleId IdType="pubmed">21646160</ArticleId></ArticleIdList></Reference><Reference><Citation>New Phytol. 2012 Nov;196(3):726-37</Citation><ArticleIdList><ArticleId IdType="pubmed">22943289</ArticleId></ArticleIdList></Reference><Reference><Citation>J Exp Bot. 2002 Apr;53(370):979-87</Citation><ArticleIdList><ArticleId IdType="pubmed">11912240</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2004 Jul;16(7):1707-16</Citation><ArticleIdList><ArticleId IdType="pubmed">15194819</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2013 May;25(5):1483</Citation><ArticleIdList><ArticleId IdType="pubmed">23653470</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2010;11(2):R14</Citation><ArticleIdList><ArticleId IdType="pubmed">20132535</ArticleId></ArticleIdList></Reference><Reference><Citation>Biotechnol Biofuels. 2016 Jul 04;9:136</Citation><ArticleIdList><ArticleId IdType="pubmed">27382413</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Plant Biol. 2002 Oct;5(5):430-6</Citation><ArticleIdList><ArticleId IdType="pubmed">12183182</ArticleId></ArticleIdList></Reference><Reference><Citation>Cell Res. 2009 Nov;19(11):1231-2</Citation><ArticleIdList><ArticleId IdType="pubmed">19881525</ArticleId></ArticleIdList></Reference><Reference><Citation>Naturwissenschaften. 2017 Apr;104(3-4):12</Citation><ArticleIdList><ArticleId IdType="pubmed">28246890</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11640-5</Citation><ArticleIdList><ArticleId IdType="pubmed">12185253</ArticleId></ArticleIdList></Reference><Reference><Citation>Biochim Biophys Acta. 2009 Jan;1787(1):46-59</Citation><ArticleIdList><ArticleId IdType="pubmed">19007746</ArticleId></ArticleIdList></Reference><Reference><Citation>J Exp Bot. 2002 Apr;53(370):773-87</Citation><ArticleIdList><ArticleId IdType="pubmed">11912221</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant. 2013 Jan;6(1):174-87</Citation><ArticleIdList><ArticleId IdType="pubmed">22888153</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2005 Feb;17(2):616-27</Citation><ArticleIdList><ArticleId IdType="pubmed">15659623</ArticleId></ArticleIdList></Reference><Reference><Citation>J Biol Chem. 2006 Dec 8;281(49):37636-45</Citation><ArticleIdList><ArticleId IdType="pubmed">17015446</ArticleId></ArticleIdList></Reference><Reference><Citation>Semin Cell Dev Biol. 2012 Aug;23(6):648-54</Citation><ArticleIdList><ArticleId IdType="pubmed">22273693</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2005 Oct 1;21(19):3787-93</Citation><ArticleIdList><ArticleId IdType="pubmed">15817693</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Evol Biol. 2010 Jul 30;10:233</Citation><ArticleIdList><ArticleId IdType="pubmed">20673336</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2015 Apr;12(4):357-60</Citation><ArticleIdList><ArticleId IdType="pubmed">25751142</ArticleId></ArticleIdList></Reference><Reference><Citation>Front Plant Sci. 2016 Feb 29;7:236</Citation><ArticleIdList><ArticleId IdType="pubmed">26973679</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2011 May;66(3):456-66</Citation><ArticleIdList><ArticleId IdType="pubmed">21255162</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2016 Jan 28;16:34</Citation><ArticleIdList><ArticleId IdType="pubmed">26822690</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2007;8(1):R7</Citation><ArticleIdList><ArticleId IdType="pubmed">17217541</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2015 Jun;168(2):575-83</Citation><ArticleIdList><ArticleId IdType="pubmed">25918116</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Mol Biol. 2008 Sep;68(1-2):17-30</Citation><ArticleIdList><ArticleId IdType="pubmed">18496756</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Ning, Kun" sort="Ning, Kun" uniqKey="Ning K" first="Kun" last="Ning">Kun Ning</name></noRegion><name sortKey="Ding, Changjun" sort="Ding, Changjun" uniqKey="Ding C" first="Changjun" last="Ding">Changjun Ding</name><name sortKey="Fan, Ruting" sort="Fan, Ruting" uniqKey="Fan R" first="Ruting" last="Fan">Ruting Fan</name><name sortKey="Huang, Qinjun" sort="Huang, Qinjun" uniqKey="Huang Q" first="Qinjun" last="Huang">Qinjun Huang</name><name sortKey="Liang, Dejun" sort="Liang, Dejun" uniqKey="Liang D" first="Dejun" last="Liang">Dejun Liang</name><name sortKey="Su, Xiaohua" sort="Su, Xiaohua" uniqKey="Su X" first="Xiaohua" last="Su">Xiaohua Su</name><name sortKey="Su, Xiaohua" sort="Su, Xiaohua" uniqKey="Su X" first="Xiaohua" last="Su">Xiaohua Su</name><name sortKey="Yang, Chengchao" sort="Yang, Chengchao" uniqKey="Yang C" first="Chengchao" 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